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Myelodysplastic Syndromes |
1 Laboratori de Citogenètica i Biologia Molecular, Laboratori de Citologia Hematològica. Servei de Patologia, IMAS. GRETNHE, IMIM-Hospital del Mar, Barcelona
2 Departament de Biologia Celular, Fisiologia i Immunologia. Facultat de Biociències. Universitat Autònoma de Barcelona, Bellaterra
3 Servicio de Hematología y IBMCC, Centro de Investigación del Cáncer, Universidad de Salamanca, Salamanca
4 Servicio de Genética, Laboratorio Gemolab, Madrid
5 Unidad de Genética. Hospital Universitario La Princesa, Madrid
6 Servicio de Hematología, Hospital Universitario La Fe, Valencia
7 Servicio de Hematología. Hospital Universitario Central de Asturias, Oviedo
8 Departamento de Genética. Universidad de Navarra, Pamplona
9 Servicio de Hematología y Hemoterapia. Hospital Arnau de Vilanova, Valencia
10 Servicio de Hematología. Consorcio Hospital General Universitario, Valencia
11 Servicio de Hematología. Hospital Universitario Marqués de Valdecilla, Santander
12 Servicio de Hematología. Hospital Sierrallana, Torrelavega
13 Servicio de Hematología. Hospital Universitario Dr Peset, Valencia
14 Servicio de Hematología, Hospital Universitario La Princesa, Madrid
15 Servicio de Genética. Hospital Universitario 12 de Octubre, Madrid
16 Servei dHematologia Clínica, IMAS. GRETNHE, IMIM-Hospital del Mar, Barcelona, Spain
Correspondence: Dr. Francesc Solé, Laboratori de, Citogenètica i Biologia Molecular, Servei de Patologia, Hospital del Mar, Passeig Marítim 25-29, 08003 Barcelona. Spain. Phone: +34.93.2483521, Fax: +34.93.2483131, e-mail:fsole{at}imas.imim.es
| ABSTRACT |
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Design and Methods: We performed fluorescence in situ hybridization of 5q31 in 716 patients, divided into two groups: group A patients (n=637) in whom the 5q deletion had not been detected at diagnosis by conventional banding cytogenetics and group B patients (n=79), in whom cytogenetic analysis had revealed the 5q deletion (positive control group).
Results: In group A (n=637), the 5q deletion was detected by fluorescence in situ hybridization in 38 cases (5.96%). The majority of positive cases were diagnosed as having the 5q- syndrome. The deletion was mainly observed in cases in which the cytogenetics study had shown no metaphases or an aberrant karyotype with chromosome 5 involved. In group B (n=79), the 5q deletion had been observed by cytogenetics and was confirmed to be present in all cases by fluorescence in situ hybridization of 5q31.
Conclusions: Fluorescence in situ hybridization of 5q31 detected the 5q deletion in 6% of cases without clear evidence of del(5q) by conventional banding cytogenetics. We suggest that fluorescence in situ hybridization of 5q31 should be performed in cases of a suspected 5q- syndrome and/or if the cytogenetic study shows no metaphases or an aberrant karyotype with chromosome 5 involved (no 5q- chromosome).
Key words: myelodysplastic syndromes, karyotype, fluorescence in situ hybridization.
| Introduction |
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50%). The most common clinical symptoms are usually related to anemia that causes transfusion dependency.1 The prognosis and clinical course of MDS vary among patients. Several scoring systems have, therefore, been established in order to predict the prognosis with regards to survival and evolution to AML. These scoring systems are mainly based on multiple prognostic parameters such as the percentage of blasts, age, karyotype, number of cytopenias and transfusion requirements.3–6 The International Prognostic Scoring System (IPSS), introduced in 1997, became the gold standard for risk assessment in patients with de novo MDS.4 However, subsequent studies revealed some pitfalls of the system; one of the most important was the inclusion of the less frequent single chromosome defects and double defects in the intermediate cytogenetic category.7–10
Cytogenetic findings have been demonstrated to play an important role in both the diagnosis and prognosis of MDS and have been given more weight in the WHO classification, which recognizes the 5q- syndrome as a new subtype of MDS.1 Conventional banding cytogenetics remains an integral component and standard in the diagnostic work up of patients with suspected MDS. Although MDS are not associated with any specific chromosomal abnormality, there are some frequent alterations: 5q-, –7/7q-, +8, –18/18q-, 20q-, –5, -Y, –17/17p- (including i(17q)).10
Partial or complete deletion of the long arm of chromosome 5 is the most recurrent cytogenetic abnormality in MDS patients, being found in 10–15% of all cases of de novo MDS.8–10 Abnormalities of chromosome 5 can present as either a sole karyotypic abnormality or in combination with other chromosomal abnormalities.11 In clinical practice, the 5q deletion can be detected by cytogenetics or by fluorescence in situ hybridization (FISH) with a fluorescently labeled probe that recognizes the 5q31 locus (EGR1).
Recently, lenalidomide (CC-5013, Revlimid®; Celgene) was approved by the USA Food and Drug Administration (FDA) for the treatment of patients with MDS with an interstitial deletion of the long arm of chromosome 5. Patients with del(5q) MDS frequently have symptomatic anemia, and the treatment of this condition has traditionally consisted of red bood cell transfusions and, for some, iron chelation therapy.12 Clinical trials assessing the efficacy of lenalidomide in MDS showed that this drug can reduce transfusion requirements and reverse cytologic and cytogenetic abnormalities in patients who have MDS with the 5q31 deletion.13,14
The aim of the present study was to apply the FISH technique in patients diagnosed with MDS in whom cytogenetic analysis had shown a normal karyotype, absence of metaphases or an abnormal karyotype without evidence of del(5q). FISH would allow the detection of the 5q deletion in those cases in which cytogenetic analysis had not found the deletion. In consequence, these patients might be candidates for treatment with lenalidomide.
| Design and Methods |
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The study was conducted with the approval of the ethical committee from our institution and in keeping with the guidelines of the Declaration of Helsinki.
Cytogenetic and FISH analyses
Cytogenetic and FISH studies were performed according to the standard methods used in our laboratory.15 Seven hundred and seventeen samples from 716 patients were analyzed by cytogenetics and FISH with LSI5q31 (EGR1)/D5S23, D5S21 probe (Abbott Molecular Inc, Des Plaines, IL, USA) at the individual centers. In two cases, whole chromosome 5 and 6 painting (Metasystems GmbH, Altlussheim, Germany) was also performed. These studies were carried out on bone marrow cells from 24-hour cultures. For FISH studies, between 100 and 400 nuclei were analyzed in order to detect the 5q deletion and/or monosomy 5. At least ten metaphases were analyzed for the painting study.
The cut-off value established to consider a sample as 5q- positive by FISH varied among the centers, from 3% to 10%. The cut-off was defined as the average plus two or three standard deviations analyzing 10–20 peripheral blood or bone marrow control samples and 200–500 nuclei.
Statistical methods
In order to analyze differences between the proportion of cells with 5q deletion detected by conventional banding cytogenetics and FISH, a statistical analysis called one-way intraclass correlation coefficient was applied. This test assesses rating reliability by comparing the variability of different ratings of the same subject to the total variation across all ratings and all subjects; the result is a value between zero and one: zero is indicative of no concordance between FISH and cytogenetic results, while one indicates complete concordance.
| Results |
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In FISH 5q- positive cases, the available FISH slides were reassessed in order to analyze the 5q- chromosome in metaphases. In 7 of 13 cases with normal karyotype and 5q- detected by FISH, the FISH slides were reviewed and metaphases with 5q deletion were detected (the results are shown in Table 3). Among five cases showing an abnormal karyotype with no involvement of chromosome 5, two cases were reevaluated looking for metaphases. In one of them, two out of ten metaphases presented 5q-, whereas, in the other case the 5q- was not detected in any of 20 metaphases. In six of nine cases with an abnormal karyotype and chromosome 5 involved, the reanalyzed metaphases showed 5q-.
Two of these cases are worth particular comment. The first one (#15) is a patient with RAEB-t/AML who had monosomy 5 according to cytogenetic analysis but the FISH study revealed only a deletion of 5q31. The metaphase analysis showed two chromosomes with a similar size, one of them with a 5q31 deletion. Whole chromosome painting for chromosome 5 was also performed; it revealed one normal chromosome 5 and another one with a portion of chromosome 5, this marker chromosome could not be identified. The other interesting case (#13), at the time of diagnosis of RAEB/RAEB-1, had, according to cytogenetic analysis, a translocation involving chromosome 5. The interphase analysis of FISH 5q revealed a deletion of the 5q31 region. The deletion was also observed when analyzing the metaphases. Whole chromosome painting of chromosomes 5 and 6 was carried out in order to confirm the t(5;6). The whole FISH studies enabled the patients cytogenetic profile to be defined as: 46,XX,der(5)t(5;6) (q13;q14),der(6)(t(5;6)(q33;q14)[18]/46,XX[2].
Fourteen cases were referred with a cytologic diagnosis of 5q- syndrome without evidence of 5q- by cytogenetics; among them, nine (cases #19, 20, 21, 22, 26, 27, 28, 29 and 31) were found to have the 5q deletion by FISH.
Group B: evidence of 5q- by conventional banding cytogenetics (positive controls)
Seventy-nine samples from patients, whose cytogenetic studies had shown 5q deletion were used as positive controls. In all of them, FISH for 5q31 was performed and confirmed the 5q deletion. We compared the proportion of cells with 5q- detected by conventional banding cytogenetics with that detected by FISH applying a statistical analysis called one-way intra-class correlation coefficient. We obtained a value of 0.284, showing a lack of significant concordance in the detection of 5q- by FISH and cytogenetics. Furthermore, this statistical test gave an average 5q- detection of about 58.20±26.62% for conventional banding cytogenetics and 53.85±22.73% for the FISH technique.
We also analyzed the distribution of gender among patients with deletion of 5q, although we only had information about sex for 489 patients. Of 38 patients from group A (5q- evidence by cytogenetics), 10 (26.3%) were male, 14 (36.8%) female and in 14 (36.8%) the gender was unknown (Table 3). Regarding cases with a diagnosis of 5q- syndrome, one was male (6.25%), seven were female (43.75%) and the gender was unknown for eight (50%). Among 79 patients with 5q- detected by conventional banding cytogenetics (group B), 28 (35.4%) were male and 51 (64.6%) female. Of the cases with 5q- syndrome (n=25), five (20%) were male and 20 (80%) female.
| Discussion |
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Within group A, among the cases with a normal karyotype (n=474), FISH detected 5q- in 13 cases (2.7%). Our results are in agreement with those of previous studies (Table 4) in which the FISH technique detected the 5q deletion in 0% to 14% of cases.16–22 The percentage of 5q- detection differed depending whether metaphases or interphase nuclei were studied. This could be related to a different rate of mitoses in cells carrying or not the 5q deletion. We tried to provide support for this hypothesis by analyzing metaphases from the FISH slides (only seven of 13 cases could be assessed): all of them presented some metaphases with the 5q deletion. This might indicate that the finding of the deletion in the FISH analysis, but not in the conventional banding cytogenetic study, could be due to the number of cells analyzed rather than a cryptic deletion. This explanation could be applied to case #40 in which a trisomy 5 was detected by FISH while cytogenetics showed a normal karyotype in 20 metaphases.
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It is noteworthy that nine cases with an abnormal karyotype involving chromosome 5 were found to have the 5q31 deletion when studied by FISH. Indeed, in our series we have six cases with a complex karyotype that showed monosomy 5. Five (cases #4, 32, 33, 34 and 35) of them had marker chromosomes in the conventional banding cytogenetic studies and were identified by FISH as 5q- chromosomes (see Table 3). The other case (#15) presented a monosomy 5 by conventional banding cytogenetics but no marker chromosomes. The FISH analysis revealed 5q deletion in interphase nuclei and in metaphases as well. Whole chromosome 5 painting showed a normal chromosome 5 and another chromosome with material from both chromosome 5 and of unknown origin.
Several studies have shown the usefulness of molecular cytogenetic techniques, such as spectral karyotyping (SKY) or multicolor FISH (M-FISH) and FISH to define abnormal karyotypes involving chromosome 5 or presenting with monosomy 5.24–29 These studies demonstrate that FISH analysis can provide additional information about chromosome 5 abnormalities. It would, therefore, be recommendable to use FISH techniques to study those cases with monosomy 5 and/or marker chromosomes in order to identify translocations with a breakpoint in 5q or possible 5q- chromosomes.
Returning to our series, three cases (#5, 13 and 32) showing a translocation involving chromosome 5 by cytogenetics were all found to have 5q31 deletion by FISH. FISH analysis of metaphases was not available for cases #5 and 32, while for patient #13, the FISH analysis revealed 90.5% of deleted nuclei and whole chromosome 5 painting helped to redefine the karyotype. These findings suggest that in cases with an abnormal karyotype involving chromosome 5 (and no evidence of 5q- by cytogenetics) it should be mandatory to apply FISH of the 5q31 region in order to detect interstitial deletions.
In our series, 5% of cases with 5q- by FISH had an abnormal karyotype without involvement of chromosome 5. Among them, two patients (cases #23 and 24) showed a complex karyotype without evidence of 5q-but by conventional banding cytogenetics had marker chromosomes. These could have been 5q- chromosomes, and this hypothesis could have been confirmed by analyzing metaphases from FISH slides but, unfortunately, this was not possible in either of the cases.
Three cases (#7, 18 and 19) had an abnormal karyotype without evidence of 5q-; these findings could suggest the presence of two clones: one with 5q- and another one with an abnormal karyotype. A similar hypothesis could explain the case previously mentioned (#39) which presented with an abnormal karyotype with two normal chromosomes 5 and monosomy 5 by FISH. This might have been confirmed by analyzing more metaphases. In one case (#18), with available fixed material, the conventional banding cytogenetic analysis was performed again and no 5q- chromosome was identified. We could assume that there were two clones, one with –7, +G and another one with 5q-. Two groups have studied cytogenetics of unrelated clones in MDS. The most commonly encountered abnormalities in the unrelated clones in patients with RA were del(5q), +8 and –7. Aberrations such as +8 and 5q- could be secondary abnormalities that develop during tumor progression.30–31
In the present study, we also used FISH to analyze 79 cases with a karyotype which had presented 5q-(group B). FISH confirmed the deletion in all cases. Regarding the proportion of cells with 5q- detected by cytogenetics and FISH, a previous study affirmed that the percentage of cells with 5q deletion detected by cytogenetics was usually lower than that detected by FISH. Nevertheless, the authors pointed out that FISH cannot be a substitute for conventional banding cytogenetics.32 According to our experience the 5q deletion can be correctly identified by both techniques, but, due to the small differences in the mean percentage of deletion 5q cells detected by cytogenetics and FISH; we cannot conclude that one technique had a higher sensitivity than the other.
In patients with 5q- detected by FISH (from group A), we were not able to compare the proportion of females and males due to the fact that gender was unknown for 14 of the patients. With regards to patients with the diagnosis of 5q- syndrome, we were able to assume a high predominance of females although there are eight patients with this diagnosis for whom we do not know the gender. We were, however, able to assess the sex ratio within group B because we had gender information for all these patients: there were more females (64.6%) than males. Examining gender distribution in patients with the 5q-syndrome, we found than 80% of these patients were female. This is in agreement with the well-known female predominance of 5q- syndrome.33
In nine cases, which were referred with the cytologic diagnosis of 5q- syndrome without evidence of 5q-by cytogenetics, the 5q deletion was detected by FISH. In these cases, FISH helped to make the definitive diagnosis, which must be based on the presence of the cytogenetic anomaly.
Conventional banding cytogenetics and FISH techniques are both able to detect del(5q). FISH is a good technique to find the 5q deletion and it has a similar efficacy to cytogenetics. Even so, it has some limitations; it can only detect anomalies that its probes are designed to detect. FISH should not be used alone at diagnosis because of the clinical implication of the karyotype;4,8,10,34 it is a complementary technique to achieve a more accurate cytogenetic analysis.
In conclusion, taking into account our results in a large series of cases of primary MDS studied by FISH, we consider that it is mandatory to apply FISH of 5q31 to detect 5q deletion in cases with an abnormal karyotype involving chromosome 5 and in cases without metaphases or that are not evaluable. In cases with a normal karyotype or an abnormal karyotype without evidence of 5q-, it would be recommendable to apply FISH in order to confirm the morphological diagnosis of 5q- syndrome and to diagnose MDS patients with 5q deletion. Both groups of patients could be candidates for treatment with lenalidomide.
| Footnotes |
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MM contributed to the conception and design of the study, acquisition, analysis and interpretation of data, drafting the article and revising it critically for important intellectual content, and gave final approval of the version to be published. LA, BE, MS, JMH, EL, MdR, EA, SR, PF, OG, MR, JC, ES, GFS, EL, CS, MG, MJC, JM, CG-B, VA, RC, IO, FC, EB, AI, LY, MJM, EG-B, RA, PL, VG, ÁS, NC, EM, AA, MLM, CP, SS, and LF: referred cases and revised the final version of the manuscript. The order of the authorship was based on the contribution of each author to the design of the study, data interpretation and writing of the manuscript. FS: contributed to the study design, data interpretation, supervised the whole study and wrote and revised the last version of the manuscript. All authors approved the version to be published. The authors also reported no potential conflicts of interest. Cytogenetics and some clinical information concerning some of the patients included in the present study have been previously reported (ref. #8). Preliminary findings of this study were presented at the 49th Annual Meeting of the Asociación Española de Hematología y Hemoterapia, Pamplona, October 25-27, 2007.
Received for publication March 5, 2008. Revision received April 22, 2008. Accepted for publication May 14, 2008.
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